Description Usage Arguments Examples
Generates parallel-job related arguments for "qsub".
1 2 3 4 | parallel_option(env = c("def_slot", "mpi", "mpi-fillup", "mpi_4",
"mpi_8", "mpi_16", "mpi_24"), slot = 1L, memory = 5.3,
master_memory = NULL, ljob = FALSE, no_rerun = TRUE,
special_que = NULL, docker_images = NA_character_)
|
env |
A character. Choose one of "def_slot", "mpi", "mpi-fillup", "mpi_4", "mpi_8", "mpi_16", "mpi_24". |
slot |
An integer. The number of slots. If env is either "mpi" or "mpi-fillup", 2-length integer vector representing minimun and maximun nubmer of slots is also accepted. |
memory |
A double. Memory requirement(Gb). |
master_memory |
A double (option). Memory requirement for the master que. If slot is 1 or master_memory is equal to memory, this argument will be ignored. |
ljob |
A logical. Whether need to run more than 2 days. if you require more than 128Gb in total, this option is automatically set as FALSE. |
no_rerun |
A logical. Whether allow to run on rerun ques. |
special_que |
A character (option). Choose one of "cp", "docker", "knl", "gpu", "groupname", "exclusive"(equivalent to groupname). If specified, ljob option will be ignored. |
docker_images |
A character (option). Valid only if special_que == "docker". |
1 | parallel_option(slot = 4L, memory = 10, master_memory = 5, ljob = TRUE)
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