lilikoi.explr: Exploratory analysis

In Duuudude/lilikoi2: Metabolomics Personalized Pathway Analysis Tool

Description

Performs source of variation test and build PCA and t-SNE plots to visualize important information.

Usage

lilikoi.explr(data, demo.data, pca = FALSE, tsne = FALSE)

Arguments

data	is a input data frame for analysis with sample ids as row names and metabolite names or pathway names as column names.
demo.data	is a demographic data frame with sample ids as row names, sample groups and demographic variable names as column names.
pca	if TRUE, PCA plot will be out.
tsne	if TRUE, T-SNE plot will be out.

Value

Source of variation test results and PCA and t-SNE plot

Examples

lilikoi.explr(data, demo.data, pca=TRUE, tsne=FALSE)

Duuudude/lilikoi2 documentation built on July 22, 2021, 10:59 a.m.