lilikoi.preproc_knn: An imputation function.

In Duuudude/lilikoi2: Metabolomics Personalized Pathway Analysis Tool

Description

This function is used to preprocess data via knn imputation.

Usage

lilikoi.preproc_knn(inputdata = Metadata, method = c("knn"))

Arguments

inputdata	An expression data frame with samples in the rows, metabolites in the columns
method	The method to be used to process data, including

Value

A KNN imputed dataset with samples in the rows, metabolites in the columns.

Examples

dt <- lilikoi.Loaddata(file=system.file("extdata",
  "plasma_breast_cancer.csv", package = "lilikoi"))
Metadata <- dt$Metadata
dataSet <- dt$dataSet
lilikoi.preproc_knn(inputdata=Metadata, method="knn")

Duuudude/lilikoi2 documentation built on July 22, 2021, 10:59 a.m.