Files in Duuudude/lilikoi2
Metabolomics Personalized Pathway Analysis Tool
DESCRIPTION
Input data for lilikoi.zip
Input data for lilikoi/Read data instruction.R
Input data for lilikoi/input data for Fig 2 performance_testing_list.csv
Input data for lilikoi/input data for Fig 2 performance_training_list.csv
Input data for lilikoi/input data for Fig 2 performance_training_opt_list.csv
Input data for lilikoi/input data for Fig 3 exprdata_tumor.csv
Input data for lilikoi/input data for Fig 3 jcevent.csv
Input data for lilikoi/input data for Fig 3 jctime.csv
Input data for lilikoi/input data for Fig 5A edgedat.csv
Input data for lilikoi/input data for Fig 5A nodedat.csv
Input data for lilikoi/input data for Fig 5B.csv
Input data for lilikoi/input data for supplementary Fig S1.csv
LICENSE
Lilikoi2 User Guide.Rmd
Meta/vignette.rds
NAMESPACE
NEWS.md
R/lilikoi.KEGGplot.R
R/lilikoi.Loaddata.r
R/lilikoi.MetaTOpathway.r
R/lilikoi.PDSfun.r
R/lilikoi.explr.R
R/lilikoi.featuresSelection.r
R/lilikoi.globals.R
R/lilikoi.machine_learning.r
R/lilikoi.meta_path.R
R/lilikoi.preproc_knn.R
R/lilikoi.preproc_norm.R
R/lilikoi.prognosis.R
R/sysdata.rda
README.md
Read data instruction.R
doc/Vignette.R
doc/Vignette.Rmd
doc/Vignette.html
input data for Fig 2 performance_testing_list.csv
input data for Fig 2 performance_training_list.csv
input data for Fig 2 performance_training_opt_list.csv
input data for Fig 3 exprdata_tumor.csv
input data for Fig 3 jcevent.csv
input data for Fig 3 jctime.csv
input data for Fig 5 Metabolite_pathway_table.csv
input data for Fig 5 PDSmatrix.csv
input data for Fig 5 selected_Pathways_Weka.csv
input data for Fig 5A edgedat.csv
input data for Fig 5A nodedat.csv
input data for Fig 5B.csv
input data for supplementary Fig S1.csv
inst/L2cross.py
inst/L2cross_nopercent.py
inst/cox_nnet3/__init__.py
inst/cox_nnet3/__pycache__/__init__.cpython-36.pyc
inst/cox_nnet3/__pycache__/cox_nnet.cpython-36.pyc
inst/cox_nnet3/__pycache__/cox_nnet3.cpython-36.pyc
inst/cox_nnet3/cox_nnet3.py
inst/extdata/JCI71180sd2_processed_lilikoi.csv
inst/extdata/JCI71180sd2_processed_tumor.xlsx
inst/extdata/data_format.csv
inst/extdata/er_162.csv
inst/extdata/performance_training_list.csv
inst/extdata/plasma_breast_cancer.csv
inst/extdata/plasma_breast_cancer_Meta.csv
inst/extdata/plasma_breast_cancer_data.csv
lilikoi2.Rproj
lilikoinet.pdf
man/lilikoi.KEGGplot.Rd
man/lilikoi.Loaddata.Rd
man/lilikoi.MetaTOpathway.Rd
man/lilikoi.PDSfun.Rd
man/lilikoi.explr.Rd
man/lilikoi.featuresSelection.Rd
man/lilikoi.machine_learning.Rd
man/lilikoi.meta_path.Rd
man/lilikoi.preproc_knn.Rd
man/lilikoi.preproc_norm.Rd
man/lilikoi.prognosis.Rd
name_map.csv
performance_testing_list_Sep_2020_option.rds
performance_training_list_Sep_2020_option.rds
performance_training_opt_list_Sep_2020_option.rds
test.csv
vignettes/Vignette.Rmd
x.csv
ystatus.csv
ytime.csv
