lilikoi.meta_path: Metabolite-pathway regression

In Duuudude/lilikoi2: Metabolomics Personalized Pathway Analysis Tool

Description

Performs single variate linear regression between selected pathways and each of their metabolites. Output the network plot between pathways and metabolties.

Usage

lilikoi.meta_path(
  PDSmatrix,
  selected_Pathways_Weka,
  Metabolite_pathway_table,
  pathway = "Alanine, Aspartate And Glutamate Metabolism"
)

Arguments

PDSmatrix	Pathway deregulation score matrix
selected_Pathways_Weka	Selected top pathways from the featureSelection function
Metabolite_pathway_table	Metabolites mapping table
pathway	interested pathway name

Value

A bipartite graph of the relationships between pathways and their corresponding metabolites.

Duuudude/lilikoi2 documentation built on July 22, 2021, 10:59 a.m.