Files in EDIorg/taxonomyCleanr
A workflow and set of functions to clean taxonomy data using R
.github/.gitignore
.github/workflows/pkgdown.yaml
.gitignore
.travis.yml
AUTHORS.md
CODE_OF_CONDUCT.md
CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/count_taxa.R
R/create_taxa_map.R
R/get_classification.R
R/make_taxonomicCoverage.R
R/remove_taxa.R
R/replace_taxa.R
R/resolve_comm_taxa.R
R/resolve_sci_taxa.R
R/revise_taxa.R
R/trim_taxa.R
R/validate_arguments.R
R/view_taxa_authorities.R
R/write_taxa_map.R
README.md
_pkgdown.yml
codemeta.json
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/CONTRIBUTING.html
docs/LICENSE-text.html
docs/articles/a_common_use_case.html
docs/articles/a_common_use_case_files/anchor-sections-1.0/anchor-sections.css
docs/articles/a_common_use_case_files/anchor-sections-1.0/anchor-sections.js
docs/articles/a_common_use_case_files/header-attrs-2.11/header-attrs.js
docs/articles/a_common_use_case_files/kePrint-0.0.1/kePrint.js
docs/articles/a_common_use_case_files/lightable-0.0.1/lightable.css
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/count_taxa.html
docs/reference/create_taxa_map.html
docs/reference/get_authority.html
docs/reference/get_classification.html
docs/reference/get_id.html
docs/reference/get_id_common.html
docs/reference/index.html
docs/reference/load_gnr_datasources.html
docs/reference/make_taxonomicCoverage.html
docs/reference/optimize_match.html
docs/reference/optimize_match_common.html
docs/reference/read_taxa_map.html
docs/reference/remove_taxa.html
docs/reference/replace_taxa.html
docs/reference/resolve_comm_taxa.html
docs/reference/resolve_sci_taxa.html
docs/reference/revise_taxa.html
docs/reference/set_taxonomic_coverage.html
docs/reference/trim_taxa.html
docs/reference/validate_arguments.html
docs/reference/validate_path.html
docs/reference/view_taxa_authorities.html
docs/reference/write_taxa_map.html
docs/sitemap.xml
inst/example_data.txt
inst/taxa_map.csv
inst/taxa_map_resolve_sci_taxa/taxa_map.csv
inst/taxonomicCoverage.xml
inst/test_data.txt
man/count_taxa.Rd
man/create_taxa_map.Rd
man/get_authority.Rd
man/get_classification.Rd
man/get_id.Rd
man/get_id_common.Rd
man/load_gnr_datasources.Rd
man/make_taxonomicCoverage.Rd
man/optimize_match.Rd
man/optimize_match_common.Rd
man/read_taxa_map.Rd
man/remove_taxa.Rd
man/replace_taxa.Rd
man/resolve_comm_taxa.Rd
man/resolve_sci_taxa.Rd
man/revise_taxa.Rd
man/set_taxonomic_coverage.Rd
man/trim_taxa.Rd
man/validate_arguments.Rd
man/validate_path.Rd
man/view_taxa_authorities.Rd
man/write_taxa_map.Rd
taxonomyCleanr.Rproj
tests/testthat.R
tests/testthat/test_count_taxa.R
tests/testthat/test_create_taxa_map.R
tests/testthat/test_get_classification.R
tests/testthat/test_make_taxonomicCoverage.R
tests/testthat/test_remove_taxa.R
tests/testthat/test_replace_taxa.R
tests/testthat/test_resolve_comm_taxa.R
tests/testthat/test_resolve_sci_taxa.R
tests/testthat/test_revise_taxa.R
tests/testthat/test_trim_taxa.R
tests/testthat/test_validate_arguments.R
tests/testthat/test_view_taxa_authorities.R
tests/testthat/test_write_taxa_map.R
vignettes/.gitignore
vignettes/a_common_use_case.Rmd
