mass_error_plot: Generates mass-error plot for CoreMS output data

In EMSL-Computing/fticRanalysis: Analysis and visualization tools for FT-MS data

Generates mass-error plot for CoreMS output data

Description

Generates mass-error plot for CoreMS output data

Usage

mass_error_plot(
  cmsObj,
  min_conf = NULL,
  title = NULL,
  xlabel = "Mass to charge ratio (m/z)",
  ylabel = "Mass error (ppm)",
  xrange = NULL,
  yrange = NULL,
  color_pal = NULL,
  log_color_scale = FALSE
)

Arguments

cmsObj	a data.frame of MS data with columns containing calculated m/z, mass error (ppm), and file names, the output of function read_CoreMS_data
min_conf	a numeric value between 0 and 1 specifying a minimum confidence threshold to apply to the dataset. Peaks with confidence scores lower than the threshold will be omitted from the plot.
title	a character string specifying the plot title
xlabel	a character string specifying the x-axis label
ylabel	a character string specifying the y-axis label
xrange	a numerical vector of length 2 specifying the x-axis range
yrange	a numerical vector of length 2 specifying the y-axis range
color_pal	has not yet been implemented
log_color_scale	logical, if TRUE, color scale will be log-transformed. Defaults to FALSE.

Value

plotly object

EMSL-Computing/fticRanalysis documentation built on March 23, 2024, 8:36 p.m.