Man pages for ETHZ-INS/epiwraps
epiwraps: Wrappers for plotting and dealing with epigenomics data
| addAssayToESE | addAssayToESE |
| annotateRegions | annotateRegions |
| bam2bw | bam2bw: create a coverage bigwig file from an alignment bam... |
| bamChrChunkApply | bamChrChunkApply |
| breakStrings | breakStrings |
| callPeaks | callPeaks |
| clusterSignalMatrices | clusterSignalMatrices: clusters the regions of a (set of)... |
| estimateFragSize | estimateFragSize |
| exampleDNAme | Example DNAme data on some active gene bodies |
| exampleESE | Example EnrichmentSE object |
| formatGenomicDist | formatGenomicDist |
| frag2bw | frag2bw |
| fragSizesDist | fragSizesDist |
| getCounts | getCounts |
| getCovStats | getCovStats |
| getEmpiricalFDR | getEmpiricalFDR |
| getNormFactors | getNormFactors : estimate normalization factors from genomic... |
| getSignalMatrices | getSignalMatrices |
| importBedlike | importBedlike |
| inject | Inject (insert) values at positions in a vector |
| meltSignals | meltSignals |
| mergeSignalMatrices | mergeSignalMatrices: aggregates two or more signal matrices. |
| ml2ESE | Creates an EnrichmentSE from a list of normalizedMatrix... |
| motifFootprint | motifFootprint |
| plotCorFromCovStats | plotCorFromCovStats |
| plotCovStats | plotCovStats |
| plotEnrichedHeatmaps | plotEnrichedHeatmaps: Plots heatmaps of signals around a set... |
| plotSignalTracks | plotSignalTracks |
| reduceWithResplit | Merge regions, re-splitting large merges using local overlap... |
| refragment | refragment |
| regionCAT | regionCAT |
| regionOverlaps | regionOverlaps |
| regionUpset | regionUpset |
| renormalizeSignalMatrices | renormalizeSignalMatrices |
| resizeMatrix | resize a numeric matrix to given dimensions |
| showTrackInfo | showTrackInfo |
| signal2Matrix | signal2Matrix: reads the signals in/around a set of genomic... |
| signalsAcrossSamples | signalsAcrossSamples |
| tabixChrApply | tabixChrApply |
| tileRle | tileRle |
| TSSenrichment | TSSenrichment |
| views2Matrix | views2Matrix |
