motifFootprint: motifFootprint
In ETHZ-INS/epiwraps: epiwraps: Wrappers for plotting and dealing with epigenomics data
motifFootprint R Documentation
motifFootprint
Description
This is a wrapper around 'ATACseqQC::factorFootprints', making it compatible
with a broader variety of inputs and use cases.
Usage
motifFootprint(bamfile, motif, motif_occurences, genome = NULL, around = 100)
Arguments
bamfile
The path to a bam file
motif
The motif (as probability matrix)
motif_occurences
A GRanges of the motif occurences
genome
Optional genome used for seqlengths (otherwise estimated from
the occurences)
around
How much around the motif to plot
Value
A plot
ETHZ-INS/epiwraps documentation built on May 4, 2024, 6:25 a.m.
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| motifFootprint | R Documentation |
motifFootprint
Description
This is a wrapper around 'ATACseqQC::factorFootprints', making it compatible with a broader variety of inputs and use cases.
Usage
motifFootprint(bamfile, motif, motif_occurences, genome = NULL, around = 100)
Arguments
bamfile |
The path to a bam file |
motif |
The motif (as probability matrix) |
motif_occurences |
A GRanges of the motif occurences |
genome |
Optional genome used for seqlengths (otherwise estimated from the occurences) |
around |
How much around the motif to plot |
Value
A plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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