tileRle: tileRle

In ETHZ-INS/epiwraps: epiwraps: Wrappers for plotting and dealing with epigenomics data

tileRle

Description

Creates an Rle of fixed-with bins from a continuous numeric Rle

Usage

tileRle(x, bs = 10L, method = c("max", "min", "mean"), roundSummary = FALSE)

Arguments

x	A numeric 'Rle' (or 'RleList')
bs	A positive integer specifying the bin size
method	The method for summarizing bins
roundSummary	Logical; whether to round bins with summarized coverage (default FALSE)

Value

An object of same class and length as 'x'

Examples

# creating a dummy coverage and visualizing it:
cov <- Rle(rpois(100,0.5))
plot(cov, type="l", col="lightgrey")
# summarizing to tiles of width 5 (by default using maximum)
cov2 <- tileRle(cov, bs=5L)
lines(cov2, col="red")

ETHZ-INS/epiwraps documentation built on Dec. 22, 2024, 4:05 a.m.