Files in EliLillyCo/surfaltr
Rapid Comparison of Surface Protein Isoform Membrane Topologies Through surfaltr
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/align_org_prts.R
R/align_prts.R
R/check_tmhmm_install.R
R/clean_data.R
R/ensembl_db_retrieval.R
R/format_ids.R
R/get_aas.R
R/get_pairs.R
R/get_phobius.R
R/get_prts.R
R/get_tmhmm.R
R/graph_from_aas.R
R/graph_from_ids.R
R/graph_prots.R
R/merge_trans.R
R/plot_isoforms.R
R/process_tmhmm.R
R/rank_prts.R
R/run_phobius.R
R/split_fasta.R
R/sysdata.rda
R/test_surfaltr.R
R/tmhmm_fix_path.R
README.md
inst/extdata/CRB1.csv
inst/extdata/crb1_example.csv
inst/extdata/hpa_example.csv
inst/extdata/hpa_genes.csv
inst/extdata/hpa_mouse_example.csv
man/Crb1.Rd
man/align_org_prts.Rd
man/align_prts.Rd
man/check_tmhmm_install.Rd
man/clean_data.Rd
man/ensembl_db_retrieval.Rd
man/format_ids.Rd
man/get_aas.Rd
man/get_pairs.Rd
man/get_phobius.Rd
man/get_prts.Rd
man/get_tmhmm.Rd
man/graph_from_aas.Rd
man/graph_from_ids.Rd
man/graph_prots.Rd
man/hpa_genes.Rd
man/hpa_mouse_genes.Rd
man/merge_trans.Rd
man/plot_isoforms.Rd
man/process_tmhmm.Rd
man/rank_prts.Rd
man/run_phobius.Rd
man/split_fasta.Rd
man/test_surfaltr.Rd
man/tmhmm_fix_path.Rd
tests/testthat.R
tests/testthat/sysdata.rda
tests/testthat/test_surfaltr.R
vignettes/.gitignore
vignettes/CRB1.csv
vignettes/CRB1_fasta_ss.PNG
vignettes/Combo_Table.csv
vignettes/Figure_1.png
vignettes/Figure_2.png
vignettes/Figure_3.png
vignettes/Figure_4.png
vignettes/Figure_5.png
vignettes/Format_Table.csv
vignettes/Input_Table.csv
vignettes/TM_Table.csv
vignettes/crb1_output.PNG
vignettes/hpa_genes.csv
vignettes/nature-no-et-al.csl
vignettes/output/AA.fasta
vignettes/output/transcript_pairs.csv
vignettes/rsconnect/surfaltr_vignette.dcf
vignettes/surfaltr_vignette.Rmd
vignettes/surfaltr_vignette.html
vignettes/surfaltrbib.bib
