ensembl_db_retrieval: Retrieve Transcript Information from Ensembl for all Primary...

In EliLillyCo/surfaltr: Rapid Comparison of Surface Protein Isoform Membrane Topologies Through surfaltr

Retrieve Transcript Information from Ensembl for all Primary Transcripts

Description

This function retrieves all the primary transcripts in the given organism and their corresponding gene names, APPRIS annotations, and UniProt IDs.

Usage

ensembl_db_retrieval(organism)

Arguments

organism

String indicating if mouse or human transcripts should be retrieved

Value

A data frame containing the gene names, transcript IDs, APPRIS annotations, UniProt Swissprot IDs, UniProt Swissprot isoform IDs, and UniProt TREMBL IDs for all the primary transcripts in an organism.

EliLillyCo/surfaltr documentation built on May 3, 2022, 10:12 a.m.