rank_prts: Rank the surface proteins by differences in principal and...
In EliLillyCo/surfaltr: Rapid Comparison of Surface Protein Isoform Membrane Topologies Through surfaltr
rank_prts R Documentation
Rank the surface proteins by differences in principal and alternative isoforms
Description
This function creates a data frame containing the primary and alternative
transcripts of each gene ranked by how different the resultant surface proteins
are. Transcripts can be ranked by length, number of transmembrane domains,
or a combo metric that multiplied the difference in length by the number of
transmembrane domains and ranks accordingly. This function can also be set
to restrict the number of genes that are returned to the user to show only
the most significant gene transcripts.
Usage
rank_prts(counts, rank, n_prts)
Arguments
counts
A data frame containing the overall length and individual lengths of
each section of the surface protein corresponding to a certain transcript.
rank
String indicating which method to use to rank proteins in graphic
output. Options include "Length", "TM", and "Combo".
n_prts
Integer value indicating the number of genes that should be
displayed on the graphical output. Default value is 20.
Value
A data frame containing the overall length and individual lengths of
each section of the surface protein corresponding to a certain transcript
ranked by how different the primary and alternative transcripts are
functionally.
EliLillyCo/surfaltr documentation built on May 3, 2022, 10:12 a.m.
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| rank_prts | R Documentation |
Rank the surface proteins by differences in principal and alternative isoforms
Description
This function creates a data frame containing the primary and alternative transcripts of each gene ranked by how different the resultant surface proteins are. Transcripts can be ranked by length, number of transmembrane domains, or a combo metric that multiplied the difference in length by the number of transmembrane domains and ranks accordingly. This function can also be set to restrict the number of genes that are returned to the user to show only the most significant gene transcripts.
Usage
rank_prts(counts, rank, n_prts)
Arguments
counts |
A data frame containing the overall length and individual lengths of each section of the surface protein corresponding to a certain transcript. |
rank |
String indicating which method to use to rank proteins in graphic output. Options include "Length", "TM", and "Combo". |
n_prts |
Integer value indicating the number of genes that should be displayed on the graphical output. Default value is 20. |
Value
A data frame containing the overall length and individual lengths of each section of the surface protein corresponding to a certain transcript ranked by how different the primary and alternative transcripts are functionally.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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