tmhmm_fix_path: Retrieve Data from TMHMM and Fix Functionality of TMHMM R...
In EliLillyCo/surfaltr: Rapid Comparison of Surface Protein Isoform Membrane Topologies Through surfaltr
View source: R/tmhmm_fix_path.R
tmhmm_fix_path R Documentation
Retrieve Data from TMHMM and Fix Functionality of TMHMM R Package
Description
This function retrieves the raw data from tmhmm containing information
about the membrane location of each amino acid in a transcript.
In order to set a standard path that allows tmhmm to run, the path
is set to match that of the fasta file contining the amino acids.
Usage
tmhmm_fix_path(fasta_filename, folder_name)
Arguments
fasta_filename
Parameter containing input fasta file to be run on
tmhmm
folder_name
Path to folder containing installed tmhmm software
Value
Raw results from tmhmm containing membrane locations for
each transcript
Note
In order for this function to work, there needs to be a .fasta file
containing the amino acid sequences for each transcript called "AA.fasta"
saved to a folder called output within the working directory.
EliLillyCo/surfaltr documentation built on May 3, 2022, 10:12 a.m.
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View source: R/tmhmm_fix_path.R
| tmhmm_fix_path | R Documentation |
Retrieve Data from TMHMM and Fix Functionality of TMHMM R Package
Description
This function retrieves the raw data from tmhmm containing information about the membrane location of each amino acid in a transcript. In order to set a standard path that allows tmhmm to run, the path is set to match that of the fasta file contining the amino acids.
Usage
tmhmm_fix_path(fasta_filename, folder_name)
Arguments
fasta_filename |
Parameter containing input fasta file to be run on tmhmm |
folder_name |
Path to folder containing installed tmhmm software |
Value
Raw results from tmhmm containing membrane locations for each transcript
Note
In order for this function to work, there needs to be a .fasta file containing the amino acid sequences for each transcript called "AA.fasta" saved to a folder called output within the working directory.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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