Man pages for EliLillyCo/surfaltr
Rapid Comparison of Surface Protein Isoform Membrane Topologies Through surfaltr
| align_org_prts | Get aligned amino acid sequences for gene transcripts from... |
| align_prts | Get aligned amino acid sequences for gene transcripts |
| check_tmhmm_install | Check to make sure TMHMM 2.0 is installed in the file path... |
| clean_data | Retrieve, Clean, and Format Input Data |
| Crb1 | SurfaltR Amino Acid Test Data- Novel Mouse Retina Isoforms |
| ensembl_db_retrieval | Retrieve Transcript Information from Ensembl for all Primary... |
| format_ids | Reformat transcripts to facilitate fasta file conversion |
| get_aas | Create fasta file containing amino acid sequences based on... |
| get_pairs | Create csv and fasta files containing information about pairs... |
| get_phobius | Query Phobius web server. |
| get_prts | Create fasta file containing amino acid sequences based on... |
| get_tmhmm | Create a data frame with the membrane locations of each amino... |
| graph_from_aas | Create a plot showing membrane locations of each protein... |
| graph_from_ids | Create a plot showing membrane locations of each protein... |
| graph_prots | Create a plot showing where each amino acid is located within... |
| hpa_genes | SurfaltR Gene Name and Transcript ID Test Data- Highly... |
| hpa_mouse_genes | SurfaltR Gene Name and Transcript ID Test Data- Highly... |
| merge_trans | Associate Inputted Transcripts with Corresponding Primary... |
| plot_isoforms | Create a plot showing where each amino acid is located within... |
| process_tmhmm | Create a data frame with the membrane locations of each amino... |
| rank_prts | Rank the surface proteins by differences in principal and... |
| run_phobius | Create a data frame with the membrane locations of each amino... |
| split_fasta | Split a fasta formatted file. |
| test_surfaltr | Test the functionality of surfaltr |
| tmhmm_fix_path | Retrieve Data from TMHMM and Fix Functionality of TMHMM R... |
