Files in EricSDavis/hictoolsr
An R Package for Hi-C Data Analysis
.Rbuildignore
.github/.gitignore
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/as_ginteractions.R
R/binBedpe.R
R/calcApa.R
R/calcBedpe.R
R/calcPairs.R
R/data.R
R/extractCounts.R
R/filterBedpe.R
R/hictoolsr.R
R/mergeBedpe.R
R/plotApa.R
R/util-binBedpe.R
R/util-plotApa.R
R/util.R
README.md
_pkgdown.yml
data/loopApaFsHic.rda
data/loopApaWtHic.rda
data/loopCounts.rda
hictoolsr.Rproj
inst/extdata/FS_5kbLoops.txt
inst/extdata/WT_5kbLoops.txt
inst/extdata/atacPeaks_H3K27AcCounts_500bp.txt
inst/extdata/atacPeaks_atacCounts.txt
inst/script/loopApaData.R
inst/script/loopCounts.R
man/binAnchor.Rd
man/binBedpe.Rd
man/calcApa.Rd
man/calcBedpe.Rd
man/calcPairs.Rd
man/check_binned.Rd
man/extractCounts.Rd
man/figures/logo.png
man/filterBedpe.Rd
man/hictoolsr-package.Rd
man/loopApaFsHic.Rd
man/loopApaWtHic.Rd
man/loopCounts.Rd
man/makeGInteractionsFromDataFrame.Rd
man/mergeBedpe.Rd
man/plotApa.Rd
man/shiftAnchor.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
vignettes/.gitignore
vignettes/differential_loop_calling.Rmd
