binBedpe: Define function to flexibly bin bedpe data by hic resolution

In EricSDavis/hictoolsr: An R Package for Hi-C Data Analysis

Define function to flexibly bin bedpe data by hic resolution

Description

Define function to flexibly bin bedpe data by hic resolution

Usage

binBedpe(bedpe, res, a1Pos, a2Pos)

Arguments

bedpe	GInteractions or data.table object with paired interactions
res	Integer - resolution in which to bin bedpe anchors
a1Pos, a2Pos	Position within anchors to resize the bin. Can be a character or integer vector of length 1 or length(bedpe) designating the position for each element in bedpe. Character options are "start", "end" and "center". Integers are referenced from the start position for '+' and '*' strands and from the end position for the '-' strand.

Value

GInteractions objected binned to res by a1Pos and a2Pos.

EricSDavis/hictoolsr documentation built on Sept. 4, 2022, 12:36 a.m.