calcBedpe: Calculates all potential paired interactions from a BED file
In EricSDavis/hictoolsr: An R Package for Hi-C Data Analysis
calcBedpe R Documentation
Calculates all potential paired interactions from a BED file
Description
Calculates all potential paired interactions from a BED file
Usage
calcBedpe(
bed,
res = 10000,
x = 100,
decreasing = TRUE,
interactions = "interchromosomal"
)
Arguments
bed
data.frame in narrowpeak format
res
bin resolution for output BEDPE
x
integer top x numer of strongest or weakest peaks
decreasing
logical order by decreasing
interactions
string filter for interchromosomal or intrachromosomal interactions
Value
Returns a data.table of BEDPE interactions
EricSDavis/hictoolsr documentation built on Sept. 4, 2022, 12:36 a.m.
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| calcBedpe | R Documentation |
Calculates all potential paired interactions from a BED file
Description
Calculates all potential paired interactions from a BED file
Usage
calcBedpe( bed, res = 10000, x = 100, decreasing = TRUE, interactions = "interchromosomal" )
Arguments
bed |
data.frame in narrowpeak format |
res |
bin resolution for output BEDPE |
x |
integer top x numer of strongest or weakest peaks |
decreasing |
logical order by decreasing |
interactions |
string filter for interchromosomal or intrachromosomal interactions |
Value
Returns a data.table of BEDPE interactions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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