Files in EricSDavis/hictoolsr

An R Package for Hi-C Data Analysis

.Rbuildignore

.github/.gitignore

.github/workflows/pkgdown.yaml

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/as_ginteractions.R R/binBedpe.R R/calcApa.R R/calcBedpe.R R/calcPairs.R R/data.R R/extractCounts.R R/filterBedpe.R R/hictoolsr.R R/mergeBedpe.R R/plotApa.R R/util-binBedpe.R R/util-plotApa.R R/util.R README.md

_pkgdown.yml

data/loopApaFsHic.rda

data/loopApaWtHic.rda

data/loopCounts.rda

hictoolsr.Rproj

inst/extdata/FS_5kbLoops.txt

inst/extdata/WT_5kbLoops.txt

inst/extdata/atacPeaks_H3K27AcCounts_500bp.txt

inst/extdata/atacPeaks_atacCounts.txt

inst/script/loopApaData.R inst/script/loopCounts.R man/binAnchor.Rd man/binBedpe.Rd man/calcApa.Rd man/calcBedpe.Rd man/calcPairs.Rd man/check_binned.Rd man/extractCounts.Rd

man/figures/logo.png

man/filterBedpe.Rd man/hictoolsr-package.Rd man/loopApaFsHic.Rd man/loopApaWtHic.Rd man/loopCounts.Rd man/makeGInteractionsFromDataFrame.Rd man/mergeBedpe.Rd man/plotApa.Rd man/shiftAnchor.Rd

pkgdown/favicon/apple-touch-icon-120x120.png

pkgdown/favicon/apple-touch-icon-152x152.png

pkgdown/favicon/apple-touch-icon-180x180.png

pkgdown/favicon/apple-touch-icon-60x60.png

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pkgdown/favicon/apple-touch-icon.png

pkgdown/favicon/favicon-16x16.png

pkgdown/favicon/favicon-32x32.png

pkgdown/favicon/favicon.ico

vignettes/.gitignore

vignettes/differential_loop_calling.Rmd

EricSDavis/hictoolsr documentation built on Sept. 4, 2022, 12:36 a.m.