Man pages for EricSDavis/hictoolsr
An R Package for Hi-C Data Analysis
| binAnchor | Define helper function for binning an anchor |
| binBedpe | Define function to flexibly bin bedpe data by hic resolution |
| calcApa | Extract BEDPE interactions from a Hi-C matrix |
| calcBedpe | Calculates all potential paired interactions from a BED file |
| calcPairs | Define function to calculate all paired interactions within a... |
| check_binned | Helper function to check that a GInteractions object has been... |
| extractCounts | Extract counts from .hic file(s) |
| filterBedpe | Filters out short BEDPE interactions |
| hictoolsr-package | hictoolsr: a set of tools for Hi-C data analysis |
| loopApaFsHic | Aggregate peak analysis of differential loop results from FS... |
| loopApaWtHic | Aggregate peak analysis of differential loop results from WT... |
| loopCounts | Merged loop calls with contact frequency from replicate Hi-C... |
| makeGInteractionsFromDataFrame | Convert DataFrames to GInteraction objects |
| mergeBedpe | Read-in and merge BEDPE Interactions by Genomic distance with... |
| plotApa | Plots Aggregate Peak Analysis Matrix |
| shiftAnchor | Define helper function for flexibly shifting an anchor |
