averageSE: Average replicated samples in a SummarizedExperiment

View source: R/averageSE.R

averageSER Documentation

Average replicated samples in a SummarizedExperiment

Description

averageSE averages replicated samples (columns) in an SummarizedExperiment.

Usage

averageSE(x, column = character(), mainAssay = character())

Arguments

x

SummarizedExperiment.

column

character(1) defining the column in colData that defines replicates.

mainAssay

optional character(1) defining an assay on which per-row standard deviations across replicates should be calculated. The result will be stored in an additional assay with the name of mainAssay and suffix "_sd".

Value

The averages SummarizedExperiment.

Author(s)

Johannes Rainer


EuracBiomedicalResearch/CompMetaboTools documentation built on Jan. 31, 2024, 1:14 p.m.