View source: R/withinBatchFit.R
withinBatchFit  R Documentation 
withinBatchFit
fits the model model
to each row of feature abundances
(in the assay matrix specified with assay
) of x
. This allows to perform
a perbatchseparate estimation of injection order dependent signal drifts.
withinBatchFit( x, batch = x$batch, assay = "norm", model = y ~ injection_idx, method = "lmrob", minVals = 6, log.transform = TRUE )
x 

batch 

assay 

model 
model formula describing the model that should be fitted to the data within each batch. 
method 

minVals 

log.transform 

list
of length equal to the number of batches (levels of batch
)
each representing the model fits for one batch. res[[1]]
is thus the
result for the first batch and is a list
of fitted models, one for
each feature.
Johannes Rainer
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