doc/fws.md
In FellouMada/rSNPdata: R package for Analysis of P. falciparum whole genome SNPs data
NAME
calculate_Fws
USAGE
calculate_Fws(snpdata)
DESCRIPTION
calculate_Fws is a function that calculates the within-host genetic diversity (Fws). Note that the Fws is obtained using the moimix R package
OPTIONS
snpdata: an object of class SNPdata
RETURN
a SNPdata object with 2 additional columns in the meta data frame:
1. Fws: the Fws across all samples
2. COI: the complexity of infection. 1 for Fws>0.95; 2 for Fws<=0.95
FellouMada/rSNPdata documentation built on June 12, 2022, 7:29 p.m.
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NAME
calculate_Fws
USAGE
calculate_Fws(snpdata)
DESCRIPTION
calculate_Fws is a function that calculates the within-host genetic diversity (Fws). Note that the Fws is obtained using the moimix R package
OPTIONS
snpdata: an object of class SNPdata
RETURN
a SNPdata object with 2 additional columns in the meta data frame:
1. Fws: the Fws across all samples
2. COI: the complexity of infection. 1 for Fws>0.95; 2 for Fws<=0.95
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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