doc/ibs.md
In FellouMada/rSNPdata: R package for Analysis of P. falciparum whole genome SNPs data
NAME
calculate_IBS
USAGE
calculate_IBS(snpdata, mat.name="GT")
DESCRIPTION
calculate_IBS is a function that generates the dissimilarity matrix (1-IBS where IBS is the identity by state that represents the proportion of similar loci between any given pair of samples)
OPTIONS
snpdata: an object of class SNPdata
mat.name: the name of the genotype table to be used for IBS calculation
RETURN
a SNPdata object with an additional field: IBS. This is an N*N matrix (where N is the number of samples)
FellouMada/rSNPdata documentation built on June 12, 2022, 7:29 p.m.
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NAME
calculate_IBS
USAGE
calculate_IBS(snpdata, mat.name="GT")
DESCRIPTION
calculate_IBS is a function that generates the dissimilarity matrix (1-IBS where IBS is the identity by state that represents the proportion of similar loci between any given pair of samples)
OPTIONS
snpdata: an object of class SNPdata
mat.name: the name of the genotype table to be used for IBS calculation
RETURN
a SNPdata object with an additional field: IBS. This is an N*N matrix (where N is the number of samples)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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