FocusPaka/SIMD: Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site

This package provides a inferential analysis method for detecting differentially expressed CpG sites in MeDIP-seq data. It uses statistical framework and EM algorithm, to identify differentially expressed CpG sites. The methods on this package are described in the article 'Methylation-level Inferences and Detection of Differential Methylation with Medip-seq Data' by Yan Zhou, Jiadi Zhu, Mingtao Zhao, Baoxue Zhang, Chunfu Jiang and Xiyan Yang (2018, pending publication).

Getting started

Package details

AuthorYan Zhou
Bioconductor views DifferentialExpression DifferentialMethylation ImmunoOncology SingleCell
MaintainerJiadi Zhu <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
FocusPaka/SIMD documentation built on May 29, 2019, 10:57 a.m.