FocusPaka/SIMD: Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site
This package provides a inferential analysis method for detecting differentially expressed CpG sites in MeDIP-seq data. It uses statistical framework and EM algorithm, to identify differentially expressed CpG sites. The methods on this package are described in the article 'Methylation-level Inferences and Detection of Differential Methylation with Medip-seq Data' by Yan Zhou, Jiadi Zhu, Mingtao Zhao, Baoxue Zhang, Chunfu Jiang and Xiyan Yang (2018, pending publication).
Getting started
Browse package contents
Package details |
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| Author | Yan Zhou |
| Bioconductor views | DifferentialExpression DifferentialMethylation ImmunoOncology SingleCell |
| Maintainer | Jiadi Zhu <2160090406@email.szu.edu.cn> |
| License | GPL-3 |
| Version | 0.99.10 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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