classifypvalue: calculate P-value in code EMtest.

In FocusPaka/SIMD: Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site

Description

calculate P-value in code EMtest.

Usage

classifypvalue(type1, type2, type3, type4, sm1chring1, sm1chring2, sm1chring3,
  sm1chring4, p, typelength, sm1chringlength, pvalue = rep(0,
  length(sm1chring1)))

Arguments

type1	The first colum of the first matrix.
type2	The second colum of the first matrix.
type3	The third colum of the first matrix.
type4	The fourth colum of the first matrix.
sm1chring1	The first colum of the second matrix.
sm1chring2	The second colum of the second matrix.
sm1chring3	The third colum of the second matrix.
sm1chring4	The forth colum of the second matrix.
p	P-value.
typelength	The nrows of the first matrix.
sm1chringlength	The nrows of the second matrix.
pvalue	A vector, the length equals to the nrows of the second matrix.

Value

The probability.

FocusPaka/SIMD documentation built on May 29, 2019, 10:57 a.m.