emalgth1: Calculate the probability on condition that the sums more...

In FocusPaka/SIMD: Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site

Description

Calculate the probability on condition that at least a CpG contributes to a short read.

Usage

emalgth1(X)

Arguments

X	A matrix about X, the elements in X takes values on 0,1 and satisfy the sums of each row more than 1.

Value

y1 The probability when sums more than 1.

Examples

set.seed(123)
d <- matrix(0, nrow=200, ncol=50)
random_num <- sample(1:10, 200, replace=TRUE)
for(i in 1:nrow(d)){
    temp <- sample(1:50, random_num[i], replace=FALSE)
    d[i,temp] <- 1
}
result <- emalgth1(d)
head(result)

FocusPaka/SIMD documentation built on May 29, 2019, 10:57 a.m.