probBinom: Compute P-values for Medip-seq and MRE-seq data.

In FocusPaka/SIMD: Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site

Description

Compute P-values.

Usage

probBinom(t, size1, size2, c1, c2)

Arguments

t	The real value for random variable according to dataset.
size1	The sum of Medip-seq real reads of the each CpG site for control and treatment sample.
size2	The sum of MRE-seq real reads of the each CpG site for control and treatment sample.
c1	The scaling factor for MeDip-seq data.
c2	The scaling factor for MRE-seq data.

Value

p The P-values for testing the methylation expression levels for each CpG sites.

Examples

set.seed(1234)
t <- 0.1
size1 <- sample(1:1000, 1, replace=TRUE)
size2 <- sample(1:1000, 1, replace=TRUE)
c1 <- 1
c2 <- 2
result <- probBinom(t, size1, size2, c1, c2)

FocusPaka/SIMD documentation built on May 29, 2019, 10:57 a.m.