Man pages for FocusPaka/SIMD
Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site
| all_CpGsite_bin_chr18 | A simulation dataset of CpG sites. |
| classifypvalue | calculate P-value in code EMtest. |
| EM2_H1ESB1_MeDIP_sigleCpG | A simulation dataset of MeDIP CpG sites. |
| EM2_H1ESB2_MeDIP_sigleCpG | A simulation dataset of MeDIP CpG sites. |
| EMalgorithm | EM algorithm to infer CpG sites. |
| emalgth | Calculate the probability on condition that the sums equal to... |
| emalgth1 | Calculate the probability on condition that the sums more... |
| EM_H1ESB1_MeDIP_sigleCpG | A simulation dataset of MeDIP CpG sites. |
| EMtest | Inferring the methylation expression level of single sites. |
| H1ESB1_MRE_sigleCpG | A simulation dataset of MRE CpG sites. |
| H1ESB2_MRE_sigleCpG | A simulation dataset of MRE CpG sites. |
| probBinom | Compute P-values for Medip-seq and MRE-seq data. |
| SIMD-package | A method to infer the methylation expression level for each... |
| three_mre_cpg | A simulation dataset of MRE CpG sites. |
