shapiro_screen: Filter "non-normal" genes
In FrankD/nethet: A bioconductor package for high-dimensional exploration of biological network heterogeneity
Description
Usage
Arguments
Details
Value
Author(s)
Description
Filter "non-normal" genes
Usage
1
shapiro_screen(x1, x2, sign.level = 0.001)
Arguments
x1
expression matrix (condition 1)
x2
expression matrix (condition 2)
sign.level
sign.level in Shapiro-Wilk tests (default: sign.level=0.001)
Details
Discarding genes which have Shapiro-Wilk p-value (corrected for multiplicity)
smaller than sign.level in either of the two conditions. We used sign.level=0.001
in the GGMGSA paper.
Value
list consisting of
x1.filt
expression matrix (condition 1) after filtering
x2.filt
expression matrix (condition 2) after filtering
Author(s)
n.stadler
FrankD/nethet documentation built on Oct. 5, 2020, 8:22 a.m.
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Description Usage Arguments Details Value Author(s)
Description
Filter "non-normal" genes
Usage
1 | shapiro_screen(x1, x2, sign.level = 0.001)
|
Arguments
x1 |
expression matrix (condition 1) |
x2 |
expression matrix (condition 2) |
sign.level |
sign.level in Shapiro-Wilk tests (default: sign.level=0.001) |
Details
Discarding genes which have Shapiro-Wilk p-value (corrected for multiplicity) smaller than sign.level in either of the two conditions. We used sign.level=0.001 in the GGMGSA paper.
Value
list consisting of
x1.filt |
expression matrix (condition 1) after filtering |
x2.filt |
expression matrix (condition 2) after filtering |
Author(s)
n.stadler
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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