as.matrix-varPartResults-method: Convert to matrix

In GabrielHoffman/variancePartition: Quantify and interpret drivers of variation in multilevel gene expression experiments

Convert to matrix

Description

Convert varPartResults to matrix

Usage

## S4 method for signature 'varPartResults'
as.matrix(x, ...)

Arguments

x	varPartResults
...	other arguments.

Value

matrix

Examples

# load library
# library(variancePartition)

# load simulated data:
# geneExpr: matrix of gene expression values
# info: information/metadata about each sample
data(varPartData)

# Specify variables to consider
# Age is continuous so we model it as a fixed effect
# Individual and Tissue are both categorical, so we model them as random effects
form <- ~ Age + (1 | Individual) + (1 | Tissue)

# Fit model
varPart <- fitExtractVarPartModel(geneExpr[1:5, ], form, info)

# convert to matrix
as.matrix(varPart)

GabrielHoffman/variancePartition documentation built on Nov. 8, 2024, 11:17 a.m.