eBayes-method: eBayes for MArrayLM2

In GabrielHoffman/variancePartition: Quantify and interpret drivers of variation in multilevel gene expression experiments

eBayes for MArrayLM2

Description

eBayes for result of linear mixed model for with dream() using residual degrees of freedom approximated with rdf.merMod()

Usage

## S4 method for signature 'MArrayLM2'
eBayes(
  fit,
  proportion = 0.01,
  stdev.coef.lim = c(0.1, 4),
  trend = FALSE,
  robust = FALSE,
  winsor.tail.p = c(0.05, 0.1),
  legacy = NULL
)

Arguments

fit	fit
proportion	proportion
stdev.coef.lim	stdev.coef.lim
trend	trend
robust	robust
winsor.tail.p	winsor.tail.p
legacy	legacy

Value

results of eBayes using approximated residual degrees of freedom

See Also

dream(), rdf.merMod(), limma::eBayes()

GabrielHoffman/variancePartition documentation built on Nov. 8, 2024, 11:17 a.m.