Files in Galaxeee/TedSim
Temporal Dynamics Simulation of scRNA-seq and CRISR/Cas9 lineage barcodes
DESCRIPTION
NAMESPACE
R/GE_LB_sim.R
R/GeneExpression_sim.R
R/LineageBarcode_sim.R
R/SimulateCIFs.R
R/Utilities.R
R/sysdata.rda
README.md
TedSim.Rproj
data/gene_len_pool.RData
data/larvae4_sub.rda
data/len2nfrag.RData
data/match_params.rda
data/param_realdata.zeisel.imputed.RData
man/BranchCal.Rd
man/CIF2Truecounts.Rd
man/CaptureDrop.Rd
man/GeneEffects.Rd
man/Generate_profile_multi.Rd
man/Get_params.Rd
man/Get_params2.Rd
man/Mutated_state_dist.Rd
man/PlotTsne.Rd
man/PlotUmap.Rd
man/SIFGenerate.Rd
man/SampleCIF.Rd
man/SampleDen.Rd
man/SampleEdgeNew.Rd
man/Samplelineage.Rd
man/SimulateCIFs.Rd
man/SimulateCellStates.Rd
man/True2ObservedCounts.Rd
man/WalkTree.Rd
man/amplify_1cell.Rd
man/cal_amp_bias.Rd
man/expand2binary.Rd
man/generate_dropout.Rd
man/generate_mutation.Rd
man/rnorm_trunc.Rd
output/cell_meta_larvae4_20.txt
output/cell_meta_tedsim_pa0.75_step0.25.csv
output/character_matrix_pd0.txt
output/counts_larvae4_20.txt
output/counts_tedsim_pa0.75_step0.25.csv
output/observed_counts_larvae4_20.txt
output/profile_c_tedsim.txt
output/top_genes_tedsim.txt
output/tree_gt_bin_tedsim_pd0.newick
tmp_junktree.tree
vignettes/FitObservedCounts.Rmd
vignettes/Simulate-data-multi.Rmd
vignettes/TrajectoryInferTest.Rmd
vignettes/cell_meta_larvae4_20.txt
vignettes/counts_larvae4_20.txt
vignettes/observed_counts_larvae4_20.txt
vignettes/responses_NAR.Rmd
