SimulateCellStates: Simulate cell states based on the state tree

In Galaxeee/TedSim: Temporal Dynamics Simulation of scRNA-seq and CRISR/Cas9 lineage barcodes

Simulate cell states based on the state tree

Description

Simulate cell states based on the state tree

Usage

SimulateCellStates(
  par,
  cell_edges,
  state_edges,
  sif_mean,
  S,
  p_a,
  p_edge = NULL,
  max_walk = 2
)

Arguments

par	current parent node
cell_edges	edge list of the cell lineage tree
state_edges	edge list of the cell state tree
sif_mean	State Identity Factors
S	current state of the parent node
p_a	asymmetric division rate
p_edge	branching possibilities
max_walk	maximum walk distance on the state tree for one asymmetric division

Galaxeee/TedSim documentation built on Oct. 2, 2022, 1:25 a.m.