GeneEffects: Getting GeneEffects matrices

In Galaxeee/TedSim: Temporal Dynamics Simulation of scRNA-seq and CRISR/Cas9 lineage barcodes

Getting GeneEffects matrices

Description

This function randomly generates the effect size of each cif on the dynamic expression parameters

Usage

GeneEffects(ngenes, ncif, randseed, prob, geffect_mean, geffect_sd)

Arguments

ngenes	number of genes
ncif	number of cifs
prob	the probability that the effect size is not 0
geffect_mean	the mean of the normal distribution where the non-zero effect sizes are dropped from
geffect_sd	the standard deviation of the normal distribution where the non-zero effect sizes are dropped from
randomseed	(should produce same result if ngenes, ncif and randseed are all the same)

Value

a list of 3 matrices, each of dimension ngenes * ncif

Galaxeee/TedSim documentation built on Oct. 2, 2022, 1:25 a.m.