CIF2Truecounts: Simulate true count matrix given simulated CIF values

In Galaxeee/TedSim: Temporal Dynamics Simulation of scRNA-seq and CRISR/Cas9 lineage barcodes

Simulate true count matrix given simulated CIF values

Description

Simulate true count matrix given simulated CIF values

Usage

CIF2Truecounts(
  ngenes,
  ncif,
  ge_prob,
  ncells,
  cif_res,
  prop_hge = 0.015,
  mean_hge = 5,
  scale_s = 1
)

Arguments

ngenes	Number of genes
ncif	number of cifs simulated
ge_prob	ge probability
ncells	Number of cells simulated
cif_res	the CIFs simulated
mean_hge	the mean of hge, default is 5
scale_s	transcription rate scaler, or a vector to specify cell-type specific scale_s
prob_hge	the probability of hge, default is 0.015

Galaxeee/TedSim documentation built on Oct. 2, 2022, 1:25 a.m.