API for GoekeLab/proActiv
Estimate Promoter Activity from RNA-Seq data

Global functions
%>% Man page
'intronRanges<-',PromoterAnnotation-method Man page
'promoterCoordinates<-',PromoterAnnotation-method Man page
'promoterIdMapping<-',PromoterAnnotation-method Man page
PromoterAnnotation Man page Source code
PromoterAnnotation-class Man page
annotateAllIntronRanges Source code
annotateIntronRanges Source code
annotateReducedExonRanges Source code
annotateUniqueIntronRanges Source code
arrange Man page
as_tibble Man page
assays Man page
boxplotPromoters Man page Source code
buildSummarizedExperiment Source code
calculateJunctionReadCounts Man page Source code
calculatePromoterReadCounts Man page Source code
categorizePromoters Source code
colData Man page
filter Man page
fitPromoters Source code
generateBoxplot Source code
getAbsolutePromoterActivity Man page Source code
getAlternativePromoters Man page Source code
getExonRangesByTx Source code
getFirstExonRanges Source code
getGeneExpression Man page Source code
getIntronIdPerPromoter Source code
getIntronRangesByTx Source code
getIntronRanks Source code
getIntronTable Source code
getPromoterMetadata Source code
getReducedExonRanges Source code
getRelativePromoterActivity Man page Source code
getTranscriptRanges Source code
getTssRanges Source code
getUniqueIntronRanges Source code
group_by Man page
integrateProactiv Man page Source code
intronRanges Man page
intronRanges,PromoterAnnotation-method Man page
intronRanges<- Man page
intronRanges<-,PromoterAnnotation-method Man page
loadDb Man page
mutate Man page
n Man page
normalizePromoterReadCounts Man page Source code
parseFile Source code
parseTxdb Source code
plotHeatmap Man page Source code
plotPCA Man page Source code
preparePromoterAnnotation Man page Source code
proActiv Man page Source code
promoterAnnotation.gencode.v34.subset Man page
promoterCoordinates Man page
promoterCoordinates,PromoterAnnotation-method Man page
promoterCoordinates<- Man page
promoterCoordinates<-,PromoterAnnotation-method Man page
promoterIdMapping Man page
promoterIdMapping,PromoterAnnotation-method Man page
promoterIdMapping<- Man page
promoterIdMapping<-,PromoterAnnotation-method Man page
reexports Man page
rowData Man page
rownames_to_column Man page
summarizeAcrossCondition Source code
GoekeLab/proActiv documentation built on June 26, 2021, 6:39 a.m.