getAbsolutePromoterActivity: Prepare the absolute promoter activity table including the...

In GoekeLab/proActiv: Estimate Promoter Activity from RNA-Seq data

Description

Prepare the absolute promoter activity table including the promoter and gene ids

Usage

getAbsolutePromoterActivity(
  junctionReadCounts,
  promoterAnnotation,
  log2 = TRUE,
  pseudocount = 1
)

Arguments

junctionReadCounts	Matrix of junction read counts (rows: promoters, cols: samples)
promoterAnnotation	A PromoterAnnotation object containing the intron ranges, promoter coordinates and the promoter id mapping
log2	Logical indicating whether log2 read counts should be used (default: TRUE) or not
pseudocount	Number to be used for log2 as pseudocount if log2 is TRUE

Value

data.frame of absolute promoter activity with promoter and gene ids

GoekeLab/proActiv documentation built on Jan. 30, 2022, 3:52 a.m.