getAbsolutePromoterActivity: Prepare the absolute promoter activity table including the...

Description Usage Arguments Value

View source: R/estimate-promoter-activity.R

Description

Prepare the absolute promoter activity table including the promoter and gene ids

Usage

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getAbsolutePromoterActivity(
  junctionReadCounts,
  promoterAnnotation,
  log2 = TRUE,
  pseudocount = 1
)

Arguments

junctionReadCounts

Matrix of junction read counts (rows: promoters, cols: samples)

promoterAnnotation

A PromoterAnnotation object containing the intron ranges, promoter coordinates and the promoter id mapping

log2

Logical indicating whether log2 read counts should be used (default: TRUE) or not

pseudocount

Number to be used for log2 as pseudocount if log2 is TRUE

Value

data.frame of absolute promoter activity with promoter and gene ids


GoekeLab/proActiv documentation built on June 26, 2021, 6:39 a.m.