Man pages for GoekeLab/proActiv
Estimate Promoter Activity from RNA-Seq data

boxplotPromotersVisualizes promoter activity and gene expression with...
calculateJunctionReadCountsCalculate the total number of junction reads overlapping with...
calculatePromoterReadCountsCalculate the promoter read counts using junction read counts...
getAbsolutePromoterActivityPrepare the absolute promoter activity table including the...
getAlternativePromotersIdentifies alternative promoters.
getGeneExpressionPrepare the gene expression table including the gene ids
getRelativePromoterActivityPrepare the relative promoter activity table including the...
integrateProactivIntegrate multiple proActiv runs
normalizePromoterReadCountsNormalize promoter read counts using DESeq2
plotHeatmapVisualizes heatmap of features for samples
plotPCAPerforms principal component analysis
preparePromoterAnnotationPrepares promoter annotation from a gtf or txdb
proActivEstimates promoter counts and activity in a single command
PromoterAnnotation-classS4 class for promoter annotation data for a specific...
promoterAnnotation.gencode.v34.subsetPromoter annotation for Gencode.v34 (subset)
reexportsObjects exported from other packages
GoekeLab/proActiv documentation built on June 26, 2021, 6:39 a.m.