promoterAnnotation.gencode.v34.subset: Promoter annotation for Gencode.v34 (subset)

Description Usage Format

Description

Promoter annotation for Gencode.v34 (chr1:10,000,000 - 30,000,000)

Usage

1

Format

A PromoterAnnotation (S4 Class) object containing all promoter annotation objects for Gencode.v34 chr1:10,000,000-30,000,000. The object has 3 slots:

intronRanges

A GRanges object of 4,523 ranges corresponding to introns, annotated with the associated transcript.

promoterIdMapping

The id mapping between transcript names, promoter ids and gene ids for Gencode v34.

promoterCoordinates

A GRanges object of 1,380 ranges showing the tss coordinate for each promoter of Gencode v34 chr1:10,000,000-30,000,000, annotated with the associated gene id, coordinate of the 3' end of the first reduced exon, and intron id.


GoekeLab/proActiv documentation built on June 26, 2021, 6:39 a.m.