BASiCSSimulate: BASiCS simulation

In Granoia/splatter-mod: Simple Simulation of Single-cell RNA Sequencing Data

Description

Simulate counts using the BASiCS method.

Usage

BASiCSSimulate(params = newBASiCSParams(), verbose = TRUE, ...)

Arguments

params	BASiCSParams object containing simulation parameters.
verbose	logical. Whether to print progress messages
...	any additional parameter settings to override what is provided in params.

Details

This function is just a wrapper around BASiCS_Sim that takes a BASiCSParams, runs the simulation then converts the output to a SingleCellExperiment object. See BASiCS_Sim for more details of how the simulation works.

Value

SingleCellExperiment containing simulated counts

References

Vallejos CA, Marioni JC, Richardson S. BASiCS: Bayesian Analysis of Single-Cell Sequencing data. PLoS Computational Biology (2015).

Paper: 10.1371/journal.pcbi.1004333

Code: https://github.com/catavallejos/BASiCS

Examples

sim <- BASiCSSimulate()

Granoia/splatter-mod documentation built on May 28, 2019, 12:31 a.m.