Files in Granoia/splatter-mod

Simple Simulation of Single-cell RNA Sequencing Data

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/AllClasses.R R/AllGenerics.R R/BASiCS-estimate.R R/BASiCS-simulate.R R/BASiCSParams-methods.R R/Lun2Params-methods.R R/LunParams-methods.R R/MFAParams-methods.R R/Params-methods.R R/PhenoParams-methods.R R/SCDDParams-methods.R R/SCE-functions.R R/SimpleParams-methods.R R/SparseDCParams-methods.R R/SplatParams-methods.R R/ZINBParams-methods.R R/compare.R R/listSims.R R/lun-estimate.R R/lun-simulate.R R/lun2-estimate.R R/lun2-simulate.R R/mfa-estimate.R R/mfa-simulate.R R/params-functions.R R/pheno-estimate.R R/pheno-simulate.R R/scDD-estimate.R R/scDD-simulate.R R/simple-estimate.R R/simple-simulate.R R/sparseDC-estimate.R R/sparseDC-simulate.R R/splat-estimate.R R/splat-simulate.R R/splatter-package.R R/utils.R R/zinb-estimate.R R/zinb-simulate.R README.md

_pkgdown.yml

appveyor.yml

codecov.yml

docs/LICENSE-text.html

docs/LICENSE.html

docs/articles/index.html

docs/articles/splat-model.png

docs/articles/splat_params.html

docs/articles/splat_params_files/figure-html/batch-factors-1.png

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docs/articles/splat_params_files/figure-html/paths-steps-2.png

docs/articles/splatter-logo-small.png

docs/articles/splatter.html

docs/articles/splatter_files/figure-html/batch-groups-1.png

docs/articles/splatter_files/figure-html/batches-1.png

docs/articles/splatter_files/figure-html/comparison-libsize-features-1.png

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docs/articles/splatter_files/figure-html/difference-1.png

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docs/articles/splatter_files/figure-html/groups-1.png

docs/articles/splatter_files/figure-html/paths-1.png

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docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/extra.css

docs/index.html

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/BASiCSEstimate.html

docs/reference/BASiCSParams.html

docs/reference/BASiCSSimulate.html

docs/reference/Lun2Params.html

docs/reference/LunParams.html

docs/reference/MFAParams.html

docs/reference/Params.html

docs/reference/PhenoParams.html

docs/reference/SCDDParams.html

docs/reference/SimpleParams.html

docs/reference/SparseDCParams.html

docs/reference/SplatParams.html

docs/reference/ZINBParams.html

docs/reference/addFeatureStats.html

docs/reference/addGeneLengths.html

docs/reference/bridge.html

docs/reference/bringItemsForward.html

docs/reference/compareSCESets.html

docs/reference/compareSCEs.html

docs/reference/diffSCESets.html

docs/reference/diffSCEs.html

docs/reference/expandParams.html

docs/reference/getLNormFactors.html

docs/reference/getParam.html

docs/reference/getParams.html

docs/reference/getPathOrder.html

docs/reference/index.html

docs/reference/listSims.html

docs/reference/logistic.html

docs/reference/lun2Estimate.html

docs/reference/lun2Simulate.html

docs/reference/lunEstimate.html

docs/reference/lunSimulate.html

docs/reference/makeCompPanel.html

docs/reference/makeDiffPanel.html

docs/reference/makeOverallPanel.html

docs/reference/mfaEstimate.html

docs/reference/mfaSimulate.html

docs/reference/newParams.html

docs/reference/phenoEstimate.html

docs/reference/phenoSimulate.html

docs/reference/rbindMatched.html

docs/reference/scDDEstimate.html

docs/reference/scDDSimulate.html

docs/reference/setParam.html

docs/reference/setParamUnchecked.html

docs/reference/setParams.html

docs/reference/setParamsUnchecked.html

docs/reference/showDFs.html

docs/reference/showPP.html

docs/reference/showValues.html

docs/reference/simpleEstimate.html

docs/reference/simpleSimulate.html

docs/reference/sparseDCEstimate.html

docs/reference/sparseDCSimulate.html

docs/reference/splatEstBCV.html

docs/reference/splatEstDropout.html

docs/reference/splatEstLib.html

docs/reference/splatEstMean.html

docs/reference/splatEstOutlier.html

docs/reference/splatEstimate.html

docs/reference/splatSimBCVMeans.html

docs/reference/splatSimBatchCellMeans.html

docs/reference/splatSimBatchEffects.html

docs/reference/splatSimCellMeans.html

docs/reference/splatSimDE.html

docs/reference/splatSimDropout.html

docs/reference/splatSimGeneMeans.html

docs/reference/splatSimLibSizes.html

docs/reference/splatSimTrueCounts.html

docs/reference/splatSimulate.html

docs/reference/splatter.html

docs/reference/summariseDiff.html

docs/reference/winsorize.html

docs/reference/zinbEstimate.html

docs/reference/zinbSimulate.html

docs/sitemap.xml

environment.yml

index.md

inst/CITATION

inst/NEWS.Rd

inst/WORDLIST

man/BASiCSEstimate.Rd man/BASiCSParams.Rd man/BASiCSSimulate.Rd man/Lun2Params.Rd man/LunParams.Rd man/MFAParams.Rd man/Params.Rd man/PhenoParams.Rd man/SCDDParams.Rd man/SimpleParams.Rd man/SparseDCParams.Rd man/SplatParams.Rd man/ZINBParams.Rd man/addFeatureStats.Rd man/addGeneLengths.Rd man/bridge.Rd man/bringItemsForward.Rd man/compareSCEs.Rd man/diffSCEs.Rd man/expandParams.Rd man/getLNormFactors.Rd man/getParam.Rd man/getParams.Rd man/getPathOrder.Rd man/listSims.Rd man/logistic.Rd man/lun2Estimate.Rd man/lun2Simulate.Rd man/lunEstimate.Rd man/lunSimulate.Rd man/makeCompPanel.Rd man/makeDiffPanel.Rd man/makeOverallPanel.Rd man/mfaEstimate.Rd man/mfaSimulate.Rd man/newParams.Rd man/phenoEstimate.Rd man/phenoSimulate.Rd man/rbindMatched.Rd man/scDDEstimate.Rd man/scDDSimulate.Rd man/setParam.Rd man/setParamUnchecked.Rd man/setParams.Rd man/setParamsUnchecked.Rd man/showDFs.Rd man/showPP.Rd man/showValues.Rd man/simpleEstimate.Rd man/simpleSimulate.Rd man/sparseDCEstimate.Rd man/sparseDCSimulate.Rd man/splatEstBCV.Rd man/splatEstDropout.Rd man/splatEstLib.Rd man/splatEstMean.Rd man/splatEstOutlier.Rd man/splatEstimate.Rd man/splatSimBCVMeans.Rd man/splatSimBatchCellMeans.Rd man/splatSimBatchEffects.Rd man/splatSimCellMeans.Rd man/splatSimDE.Rd man/splatSimDropout.Rd man/splatSimGeneMeans.Rd man/splatSimLibSizes.Rd man/splatSimTrueCounts.Rd man/splatSimulate.Rd man/splatter.Rd man/summariseDiff.Rd man/winsorize.Rd man/zinbEstimate.Rd man/zinbSimulate.Rd

pkgdown/extra.css

tests/spelling.R tests/testthat.R tests/testthat/test-BASiCS-simulate.R tests/testthat/test-BASiCSEstimate.R tests/testthat/test-BASiCSParams.R tests/testthat/test-Lun2Params.R tests/testthat/test-LunParams.R tests/testthat/test-MFAEstimate.R tests/testthat/test-MFAParams.R tests/testthat/test-Params.R tests/testthat/test-PhenoParams.R tests/testthat/test-SCDDParams.R tests/testthat/test-SCE-functions.R tests/testthat/test-SimpleParams.R tests/testthat/test-SparseDCParams.R tests/testthat/test-SplatParams.R tests/testthat/test-ZINBParams.R tests/testthat/test-compare.R tests/testthat/test-listSims.R tests/testthat/test-lun-simulate.R tests/testthat/test-lun2-simulate.R tests/testthat/test-lunEstimate.R tests/testthat/test-mfa-simulate.R tests/testthat/test-pheno-simulate.R tests/testthat/test-phenoEstimate.R tests/testthat/test-scDD-simulate.R tests/testthat/test-simple-simulate.R tests/testthat/test-simpleEstimate.R tests/testthat/test-sparseDC-simulate.R tests/testthat/test-sparseDCEstimate.R tests/testthat/test-splat-simulate.R tests/testthat/test-utils.R tests/testthat/test-zinb-simulate.R

vignettes/.gitignore

vignettes/splat-model.png

vignettes/splat_params.Rmd

vignettes/splatter-logo-small.png

vignettes/splatter.Rmd

Granoia/splatter-mod documentation built on May 28, 2019, 12:31 a.m.