SimpleParams: The SimpleParams class
In Granoia/splatter-mod: Simple Simulation of Single-cell RNA Sequencing Data
Description
S4 class that holds parameters for the simple simulation.
Parameters
The simple simulation uses the following parameters:
nGenesThe number of genes to simulate.
nCellsThe number of cells to simulate.
[seed]Seed to use for generating random numbers.
mean.shapeThe shape parameter for the mean gamma
distribution.
mean.rateThe rate parameter for the mean gamma
distribution.
[count.disp]The dispersion parameter for the counts
negative binomial distribution.
The parameters not shown in brackets can be estimated from real data using
simpleEstimate. For details of the simple simulation
see simpleSimulate.
Granoia/splatter-mod documentation built on May 28, 2019, 12:31 a.m.
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Description
S4 class that holds parameters for the simple simulation.
Parameters
The simple simulation uses the following parameters:
nGenesThe number of genes to simulate.
nCellsThe number of cells to simulate.
[seed]Seed to use for generating random numbers.
mean.shapeThe shape parameter for the mean gamma distribution.
mean.rateThe rate parameter for the mean gamma distribution.
[count.disp]The dispersion parameter for the counts negative binomial distribution.
The parameters not shown in brackets can be estimated from real data using
simpleEstimate. For details of the simple simulation
see simpleSimulate.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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