peakHeatmap_multiple_Sets | R Documentation |
plot the heatmap of peaks align to a sets of regions
peakHeatmap_multiple_Sets(
peak,
weightCol = NULL,
TxDb = NULL,
upstream = 1000,
downstream = 1000,
xlab = "",
ylab = "",
title = NULL,
palette = NULL,
verbose = TRUE,
by = "gene",
type = "start_site",
nbin = NULL,
ignore_strand = FALSE,
windows_name = NULL,
ncol = NULL,
nrow = NULL,
facet_label_text_size = 12
)
peak |
peak file or GRanges object |
weightCol |
column name of weight |
TxDb |
TxDb object |
upstream |
upstream position |
downstream |
downstream position |
xlab |
xlab |
ylab |
ylab |
title |
title |
palette |
palette to be filled in,details see scale_colour_brewer |
verbose |
print message or not |
by |
one of 'gene', 'transcript', 'exon', 'intron' , '3UTR' , '5UTR', 'UTR' |
type |
one of "start_site", "end_site", "body" |
nbin |
the amount of nbines |
ignore_strand |
ignore the strand information or not |
windows_name |
the name for each window, which will also be showed in the picture as labels |
ncol |
the ncol of plotting a list of peak |
nrow |
the nrow of plotting a list of peak |
facet_label_text_size |
the size of facet label text |
figure
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