plotDistToTSS-methods: plotDistToTSS method generics

In GuangchuangYu/ChIPseeker: ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

plotDistToTSS method generics

Description

plotDistToTSS method for csAnno instance

Usage

plotDistToTSS(
  x,
  distanceColumn = "distanceToTSS",
  xlab = "",
  ylab = "Binding sites (%) (5'->3')",
  title = "Distribution of transcription factor-binding loci relative to TSS",
  ...
)

## S4 method for signature 'list'
plotDistToTSS(
  x,
  distanceColumn = "distanceToTSS",
  xlab = "",
  ylab = "Binding sites (%) (5'->3')",
  title = "Distribution of transcription factor-binding loci relative to TSS",
  distanceBreaks = c(0, 1000, 3000, 5000, 10000, 1e+05),
  palette = NULL,
  ...
)

plotDistToTSS(x,distanceColumn="distanceToTSS", xlab="",
ylab="Binding sites (%) (5'->3')",
title="Distribution of transcription factor-binding loci relative to TSS",...)

Arguments

x	csAnno instance
distanceColumn	distance column name
xlab	xlab
ylab	ylab
title	title
...	additional parameter
distanceBreaks	breaks of distance, default is 'c(0, 1000, 3000, 5000, 10000, 100000)'
palette	palette name for coloring different distances. Run 'RColorBrewer::display.brewer.all()' to see all applicable values.

Value

plot

Author(s)

Guangchuang Yu https://guangchuangyu.github.io

GuangchuangYu/ChIPseeker documentation built on Oct. 31, 2024, 9:13 a.m.