plotAnnoPie: plotAnnoPie

In GuangchuangYu/ChIPseeker: ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

plotAnnoPie

Description

pieplot from peak genomic annotation

Usage

plotAnnoPie.csAnno(
  x,
  ndigit = 2,
  cex = 0.8,
  col = NA,
  legend.position = "rightside",
  pie3D = FALSE,
  radius = 0.8,
  ...
)

Arguments

x	csAnno object
ndigit	number of digit to round
cex	label cex
col	color
legend.position	topright or other.
pie3D	plot in 3D or not
radius	radius of Pie
...	extra parameter

Value

pie plot of peak genomic feature annotation

Author(s)

Guangchuang Yu https://yulab-smu.top

See Also

annotatePeak plotAnnoBar

Examples

## Not run: 
require(TxDb.Hsapiens.UCSC.hg19.knownGene)
txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene
peakfile <- system.file("extdata", "sample_peaks.txt", package="chipseeker")
peakAnno <- annotatePeak(peakfile, TxDb=txdb)
plotAnnoPie(peakAnno)

## End(Not run)

GuangchuangYu/ChIPseeker documentation built on Feb. 9, 2024, 2:06 a.m.