plotAvgProf: plotAvgProf

View source: R/plotTagMatrix.R

plotAvgProfR Documentation

plotAvgProf

Description

plot the profile of peaks

Usage

plotAvgProf(
  tagMatrix,
  xlim,
  xlab = "Genomic Region (5'->3')",
  ylab = "Peak Count Frequency",
  conf,
  facet = "none",
  free_y = TRUE,
  origin_label = "TSS",
  verbose = TRUE,
  ...
)

Arguments

tagMatrix

tagMatrix or a list of tagMatrix

xlim

xlim

xlab

x label

ylab

y label

conf

confidence interval

facet

one of 'none', 'row' and 'column'

free_y

if TRUE, y will be scaled by AvgProf

origin_label

label of the center

verbose

print message or not

...

additional parameter

Value

ggplot object

Author(s)

G Yu; Y Yan


GuangchuangYu/ChIPseeker documentation built on Oct. 31, 2024, 9:13 a.m.