plotAvgProf.binning: plotAvgProf.binning

plotAvgProf.binningR Documentation

plotAvgProf.binning

Description

plot the profile of peaks by binning

Usage

plotAvgProf.binning(
  tagMatrix,
  xlab = "Genomic Region (5'->3')",
  ylab = "Peak Count Frequency",
  conf,
  facet = "none",
  free_y = TRUE,
  upstream = NULL,
  downstream = NULL,
  label,
  ...
)

Arguments

tagMatrix

tagMatrix or a list of tagMatrix

xlab

x label

ylab

y label

conf

confidence interval

facet

one of 'none', 'row' and 'column'

free_y

if TRUE, y will be scaled

upstream

rel object reflects the percentage of flank extension, e.g rel(0.2) integer reflects the actual length of flank extension or TSS region NULL reflects the gene body with no extension

downstream

rel object reflects the percentage of flank extension, e.g rel(0.2) integer reflects the actual length of flank extension or TSS region NULL reflects the gene body with no extension

label

label

...

additional parameter

Value

ggplot object


GuangchuangYu/ChIPseeker documentation built on Oct. 31, 2024, 9:13 a.m.