plotAvgProf.binning | R Documentation |
plot the profile of peaks by binning
plotAvgProf.binning(
tagMatrix,
xlab = "Genomic Region (5'->3')",
ylab = "Peak Count Frequency",
conf,
facet = "none",
free_y = TRUE,
upstream = NULL,
downstream = NULL,
label,
...
)
tagMatrix |
tagMatrix or a list of tagMatrix |
xlab |
x label |
ylab |
y label |
conf |
confidence interval |
facet |
one of 'none', 'row' and 'column' |
free_y |
if TRUE, y will be scaled |
upstream |
rel object reflects the percentage of flank extension, e.g rel(0.2) integer reflects the actual length of flank extension or TSS region NULL reflects the gene body with no extension |
downstream |
rel object reflects the percentage of flank extension, e.g rel(0.2) integer reflects the actual length of flank extension or TSS region NULL reflects the gene body with no extension |
label |
label |
... |
additional parameter |
ggplot object
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