Files in GuangchuangYu/DOSE
Disease Ontology Semantic and Enrichment analysis

.Rbuildignore
.github/issue_template.md
.gitignore
.travis.yml
DESCRIPTION
Makefile
NAMESPACE
NEWS
NEWS.md R/00-AllClasses.R R/AllGenerics.R R/DOSE-package.R R/accessor.R R/build_Anno.R R/clusterSim.R R/doSim.R R/enrichDGN.R R/enrichDGNv.R R/enrichDO.R R/enrichDisease.R R/enrichNCG.R R/enricher_internal.R R/geneSim.R R/gseAnalyzer.R R/gsea.R R/gseaResult.R R/gsfilter.R R/mclusterSim.R R/method-fortify.R R/print.R R/setReadable.R R/simplot.R R/utilities.R R/zzz.R README.Rmd README.md
appveyor.yml
data/DGN_EXTID2PATHID.rda
data/DGN_PATHID2EXTID.rda
data/DGN_PATHID2NAME.rda
data/DO2ALLEG.rda
data/DO2EG.rda
data/DOIC.rda
data/DOLite2EG.rda
data/DOLiteTerm.rda
data/EG2ALLDO.rda
data/EG2DO.rda
data/EG2DOLite.rda
data/NCG_EXTID2PATHID.rda
data/NCG_PATHID2EXTID.rda
data/NCG_PATHID2NAME.rda
data/VDGN_EXTID2PATHID.rda
data/VDGN_PATHID2EXTID.rda
data/VDGN_PATHID2NAME.rda
data/dotbl.rda
data/geneList.rda
docs/index.html
inst/CITATION
inst/extdata/buildAnnoData.R inst/extdata/build_DGN_Anno.R inst/extdata/build_NCG_Anno.R inst/extdata/preparing.geneList.R man/DOSE-package.Rd man/DataSet.Rd man/EXTID2NAME.Rd man/GSEA_internal.Rd man/clusterSim.Rd man/computeIC.Rd man/doSim.Rd man/enrichDGN.Rd man/enrichDGNv.Rd man/enrichDO.Rd man/enrichNCG.Rd man/enrichResult-class.Rd man/enricher_internal.Rd man/fortify.enrichResult.Rd man/gene2DO.Rd man/geneID.Rd man/geneInCategory.Rd man/geneSim.Rd man/gseDGN.Rd man/gseDO.Rd man/gseNCG.Rd man/gseaResult-class.Rd man/gsfilter.Rd man/mclusterSim.Rd man/rebuildAnnoData.Rd man/reexports.Rd man/setReadable.Rd man/show-methods.Rd man/simplot.Rd man/summary-methods.Rd man/theme_dose.Rd tests/testthat.R tests/testthat/test-doSim.R tests/testthat/test-gene2DO.R tests/testthat/test-geneSim.R vignettes/DOSE.Rmd
vignettes/DOSE.bib
vignettes/GSEA.Rmd vignettes/enrichmentAnalysis.Rmd
vignettes/figures/cnet_enrichDO.png
vignettes/figures/cnet_gseNCG.png
vignettes/figures/enrichMap_enrichDO.png
vignettes/figures/enrichMap_gseNCG.png
vignettes/figures/upsetplot_enrichDO.png
vignettes/semanticAnalysis.Rmd
GuangchuangYu/DOSE documentation built on Nov. 3, 2018, 10:04 a.m.