enrichResult-class: Class "enrichResult" This class represents the result of...

In GuangchuangYu/DOSE: Disease Ontology Semantic and Enrichment analysis

Class "enrichResult" This class represents the result of enrichment analysis.

Description

Class "enrichResult" This class represents the result of enrichment analysis.

Slots

result

enrichment analysis

pvalueCutoff

pvalueCutoff

pAdjustMethod

pvalue adjust method

qvalueCutoff

qvalueCutoff

organism

only "human" supported

ontology

biological ontology

gene

Gene IDs

keytype

Gene ID type

universe

background gene

gene2Symbol

mapping gene to Symbol

geneSets

gene sets

readable

logical flag of gene ID in symbol or not.

termsim

Similarity between term

method

method of calculating the similarity between nodes

dr

dimension reduction result

Author(s)

Guangchuang Yu https://yulab-smu.top

See Also

enrichDO

GuangchuangYu/DOSE documentation built on Oct. 31, 2024, 9:15 a.m.